benchmarks for client released 1/12/2004

[Bionic_Redneck]

Gentoo linux
Kernel 2.6.2
XP1800+

bash-2.05b$ ./foldtrajlite -bench
One moment, opening rotamer library...
Predicting secondary structure and generating trajectory distribution...
Folding protein...
Benchmark complete.

<pre> Summary
Usr time Sys time
-------- --------
Maketrj 5.190 0.890
Foldtraj 59.200 15.970</pre>

[Bionic_Redneck]

XP1800+
256mb ddr
Gentoo linux
ICC client
Note: 3 different kernels ran benchmark 3 time on each for accuracy

Kernel 2.4.22


Summary
-------
Usr time Sys time
-------- --------
Maketrj 5.960 0.510
Foldtraj 72.220 9.010

Kernel 2.6.1


Summary
-------
Usr time Sys time
-------- --------
Maketrj 6.050 0.490
Foldtraj 71.720 11.220

Kernel 2.62


Summary
Usr time Sys time
-------- --------
Maketrj 5.190 0.890
Foldtraj 59.200 15.970